Almost evey every publisher I have tried works without issue.
The two exceptions are
Build other projects - excluded from selection
Trigger parametrized build on other projects (Parametrized Trigger plugin) issue:JENKINS-12418
Record fingerprints of files to track usage/Fingerprint all archived artifacts. If you Archive the artifacts from within the Flexible publisher, then the files you want to fingerprint will need to be listed explicitly as the fingerprinter will not find the archiver where it is expecting it!